J4_6QDW_006
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6QDW|1|b|G|1343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QDW_006 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0657
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6QDW|1|b|U|1315
6QDW|1|b|C|1316
*
6QDW|1|b|G|1340
6QDW|1|b|G|1341
6QDW|1|b|U|1342
6QDW|1|b|G|1343
6QDW|1|b|A|1344
6QDW|1|b|G|1345
*
6QDW|1|b|C|1406
6QDW|1|b|U|1407
*
6QDW|1|b|A|1599
6QDW|1|b|A|1600
6QDW|1|b|U|1601
6QDW|1|b|C|1602
6QDW|1|b|G|1603
6QDW|1|b|U|1604
6QDW|1|b|A|1605
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain t
- 50S ribosomal protein L23
Coloring options: