J4_6QNQ_012
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 6QNQ|1|14|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QNQ_012 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.2184
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6QNQ|1|14|C|2285
6QNQ|1|14|A|2286
6QNQ|1|14|A|2287
6QNQ|1|14|A|2288
6QNQ|1|14|G|2289
*
6QNQ|1|14|C|2343
6QNQ|1|14|U|2344
6QNQ|1|14|G|2345
6QNQ|1|14|A|2346
6QNQ|1|14|C|2347
*
6QNQ|1|14|G|2370
6QNQ|1|14|G|2371
6QNQ|1|14|G|2372
*
6QNQ|1|14|C|2381
6QNQ|1|14|G|2382
6QNQ|1|14|G|2383
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 65
- 50S ribosomal protein L18
- Chain E5
- 50S ribosomal protein L27
- Chain K5
- 50S ribosomal protein L33
- Chain M5
- 50S ribosomal protein L35
Coloring options: