J4_6QNQ_015

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNQ_015 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.175

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6QNQ|1|1G|G|142
6QNQ|1|1G|A|143
6QNQ|1|1G|G|144
*
6QNQ|1|1G|C|178
6QNQ|1|1G|A|179
6QNQ|1|1G|U|180
6QNQ|1|1G|G|181
6QNQ|1|1G|U|182
6QNQ|1|1G|G|183
*
6QNQ|1|1G|C|194
6QNQ|1|1G|A|195
6QNQ|1|1G|A|196
6QNQ|1|1G|A|197
6QNQ|1|1G|G|198
*
6QNQ|1|1G|C|219
6QNQ|1|1G|G|220
6QNQ|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20