J4_6QNR_004

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6QNR|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0885

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6QNR|1|14|C|268
6QNR|1|14|U|269
*
6QNR|1|14|G|370
6QNR|1|14|A|371
6QNR|1|14|G|372
6QNR|1|14|U|373
6QNR|1|14|A|374
6QNR|1|14|C|375
*
6QNR|1|14|G|399
6QNR|1|14|G|400
6QNR|1|14|A|401
6QNR|1|14|A|402
6QNR|1|14|U|403
6QNR|1|14|C|404
6QNR|1|14|U|405
6QNR|1|14|G|406
*
6QNR|1|14|U|421
6QNR|1|14|A|422
6QNR|1|14|A|423
6QNR|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28