J4_6QNR_013

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_013 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1142

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6QNR|1|14|G|2643
6QNR|1|14|G|2644
6QNR|1|14|G|2645
6QNR|1|14|C|2646
*
6QNR|1|14|G|2674
6QNR|1|14|A|2675
6QNR|1|14|C|2676
*
6QNR|1|14|G|2731
6QNR|1|14|G|2732
6QNR|1|14|A|2733
6QNR|1|14|A|2734
6QNR|1|14|G|2735
*
6QNR|1|14|C|2769
6QNR|1|14|G|2770
6QNR|1|14|C|2771

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3