J4_6QNR_015

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUGG*CCAAAG*CGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_015 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.5122

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6QNR|1|1G|G|142
6QNR|1|1G|A|143
6QNR|1|1G|G|144
*
6QNR|1|1G|C|178
6QNR|1|1G|A|179
6QNR|1|1G|U|180
6QNR|1|1G|G|181
6QNR|1|1G|U|182
6QNR|1|1G|G|183
6QNR|1|1G|G|184
*
6QNR|1|1G|C|193
6QNR|1|1G|C|194
6QNR|1|1G|A|195
6QNR|1|1G|A|196
6QNR|1|1G|A|197
6QNR|1|1G|G|198
*
6QNR|1|1G|C|219
6QNR|1|1G|G|220
6QNR|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20