J4_6QNR_017

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6QNR|1|1H|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.066

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6QNR|1|1H|C|258
6QNR|1|1H|U|259
*
6QNR|1|1H|G|398
6QNR|1|1H|A|399
6QNR|1|1H|G|400
6QNR|1|1H|U|401
6QNR|1|1H|A|402
6QNR|1|1H|C|403
*
6QNR|1|1H|G|427
6QNR|1|1H|G|428
6QNR|1|1H|A|429
6QNR|1|1H|A|430
6QNR|1|1H|U|431
6QNR|1|1H|C|432
6QNR|1|1H|U|433
6QNR|1|1H|G|434
*
6QNR|1|1H|U|449
6QNR|1|1H|A|450
6QNR|1|1H|A|451
6QNR|1|1H|G|452

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28