J4_6QNR_029
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6QNR|1|2L|4SU|8, 6QNR|1|2L|3AU|47, 6QNR|1|2L|C|48
- QA status
- Modified nucleotides: 4SU, 7MG, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QNR_029 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.2965
- The information below is about J4_5WT1_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6QNR|1|2L|A|7
6QNR|1|2L|4SU|8
6QNR|1|2L|A|9
6QNR|1|2L|G|10
*
6QNR|1|2L|C|25
6QNR|1|2L|A|26
6QNR|1|2L|G|27
*
6QNR|1|2L|C|43
6QNR|1|2L|G|44
6QNR|1|2L|U|45
6QNR|1|2L|7MG|46
6QNR|1|2L|3AU|47
6QNR|1|2L|C|48
6QNR|1|2L|C|49
*
6QNR|1|2L|G|65
6QNR|1|2L|U|66
Current chains
- Chain 2L
- E. coli tRNAPhe
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1L
- Transfer RNA; tRNA
- Chain 45
- 50S ribosomal protein L16
- Chain 4A
- 30S ribosomal protein S13
- Chain E5
- 50S ribosomal protein L27
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