J4_6QT0_002

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QT0_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.128

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6QT0|1|A|C|185
6QT0|1|A|U|186
6QT0|1|A|A|187
6QT0|1|A|U|188
6QT0|1|A|G|189
*
6QT0|1|A|C|205
6QT0|1|A|G|206
6QT0|1|A|U|207
6QT0|1|A|C|208
*
6QT0|1|A|G|212
6QT0|1|A|A|213
6QT0|1|A|G|214
*
6QT0|1|A|C|226
6QT0|1|A|G|227
6QT0|1|A|U|228
6QT0|1|A|G|229
6QT0|1|A|U|230
6QT0|1|A|G|231

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain X

60S ribosomal protein L26-A

Chain y

5.8S ribosomal RNA; 5.8S rRNA