3D structure

PDB id
6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
6QT0|1|A|A|1452, 6QT0|1|A|U|1455
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6QT0_003 not in the Motif Atlas
Homologous match to J4_8P9A_014
Geometric discrepancy: 0.1026
The information below is about J4_8P9A_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_34212.1
Basepair signature
cWW-F-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6QT0|1|A|C|1451
6QT0|1|A|A|1452
6QT0|1|A|A|1453
6QT0|1|A|A|1454
6QT0|1|A|U|1455
6QT0|1|A|A|1456
6QT0|1|A|U|1457
*
6QT0|1|A|A|1475
6QT0|1|A|G|1476
*
6QT0|1|A|U|1877
6QT0|1|A|G|1878
6QT0|1|A|A|1879
6QT0|1|A|U|1880
*
6QT0|1|A|A|2352
6QT0|1|A|G|2353

Current chains

Chain A
25S rRNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain U
60S ribosomal protein L17-A
Chain d
60S ribosomal protein L31-A

Coloring options:


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