J4_6QT0_011

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6QT0|1|A|U|2269, 6QT0|1|A|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QT0_011 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.3588

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6QT0|1|A|C|2192
6QT0|1|A|U|2193
6QT0|1|A|G|2194
*
6QT0|1|A|C|2248
6QT0|1|A|G|2249
*
6QT0|1|A|C|2267
6QT0|1|A|U|2268
6QT0|1|A|U|2269
6QT0|1|A|A|2270
6QT0|1|A|A|2271
6QT0|1|A|G|2272
6QT0|1|A|G|2273
6QT0|1|A|U|2274
6QT0|1|A|A|2275
6QT0|1|A|G|2276
*
6QT0|1|A|U|2310
6QT0|1|A|G|2311
6QT0|1|A|A|2312
6QT0|1|A|A|2313
6QT0|1|A|U|2314
6QT0|1|A|G|2315

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L2-A