J4_6QUL_008

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QUL_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0681

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6QUL|1|A|A|1772
6QUL|1|A|A|1773
6QUL|1|A|C|1774
6QUL|1|A|U|1775
6QUL|1|A|G|1776
*
6QUL|1|A|C|1788
6QUL|1|A|A|1789
6QUL|1|A|C|1790
6QUL|1|A|A|1791
6QUL|1|A|G|1792
*
6QUL|1|A|U|1827
6QUL|1|A|G|1828
6QUL|1|A|A|1829
6QUL|1|A|C|1830
*
6QUL|1|A|G|1975
6QUL|1|A|U|1976
6QUL|1|A|A|1977
6QUL|1|A|A|1978
6QUL|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2