J4_6RBE_002
3D structure
- PDB id
- 6RBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6RBE|1|2|A|623, 6RBE|1|2|A|1026, 6RBE|1|2|C|1028, 6RBE|1|2|U|1029, 6RBE|1|2|A|1030, 6RBE|1|2|U|1031
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6RBE_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1359
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6RBE|1|2|A|622
6RBE|1|2|A|623
6RBE|1|2|G|624
*
6RBE|1|2|C|975
6RBE|1|2|G|976
6RBE|1|2|A|977
6RBE|1|2|A|978
6RBE|1|2|A|979
6RBE|1|2|G|980
*
6RBE|1|2|C|1021
6RBE|1|2|C|1022
6RBE|1|2|A|1023
6RBE|1|2|U|1024
6RBE|1|2|A|1025
6RBE|1|2|A|1026
6RBE|1|2|A|1027
6RBE|1|2|C|1028
6RBE|1|2|U|1029
6RBE|1|2|A|1030
6RBE|1|2|U|1031
6RBE|1|2|G|1032
*
6RBE|1|2|U|1103
6RBE|1|2|U|1104
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S11-A
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14-A
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
Coloring options: