J4_6S0Z_001

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6S0Z|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S0Z_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1195

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6S0Z|1|A|C|271
6S0Z|1|A|C|272
*
6S0Z|1|A|G|416
6S0Z|1|A|A|417
6S0Z|1|A|G|418
6S0Z|1|A|U|419
6S0Z|1|A|A|420
6S0Z|1|A|C|421
*
6S0Z|1|A|G|445
6S0Z|1|A|G|446
6S0Z|1|A|A|447
6S0Z|1|A|A|448
6S0Z|1|A|U|449
6S0Z|1|A|C|450
6S0Z|1|A|U|451
6S0Z|1|A|G|452
*
6S0Z|1|A|U|467
6S0Z|1|A|A|468
6S0Z|1|A|A|469
6S0Z|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L28