J4_6S12_001

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6S12|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S12_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1842

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6S12|1|A|C|271
6S12|1|A|C|272
*
6S12|1|A|G|416
6S12|1|A|A|417
6S12|1|A|G|418
6S12|1|A|U|419
6S12|1|A|A|420
6S12|1|A|C|421
*
6S12|1|A|G|445
6S12|1|A|G|446
6S12|1|A|A|447
6S12|1|A|A|448
6S12|1|A|U|449
6S12|1|A|C|450
6S12|1|A|U|451
6S12|1|A|G|452
*
6S12|1|A|U|467
6S12|1|A|A|468
6S12|1|A|A|469
6S12|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L28