J4_6S12_006

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S12_006 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1229

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6S12|1|A|G|1799
6S12|1|A|A|1800
6S12|1|A|C|1801
6S12|1|A|U|1802
6S12|1|A|G|1803
*
6S12|1|A|C|1815
6S12|1|A|A|1816
6S12|1|A|C|1817
6S12|1|A|A|1818
6S12|1|A|G|1819
*
6S12|1|A|U|1854
6S12|1|A|G|1855
6S12|1|A|A|1856
6S12|1|A|C|1857
*
6S12|1|A|G|2002
6S12|1|A|U|2003
6S12|1|A|A|2004
6S12|1|A|A|2005
6S12|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2