J4_6S13_001
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- CC*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 6S13|1|A|U|451
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6S13_001 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.2375
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6S13|1|A|C|271
6S13|1|A|C|272
*
6S13|1|A|G|416
6S13|1|A|A|417
6S13|1|A|G|418
6S13|1|A|U|419
6S13|1|A|A|420
6S13|1|A|C|421
*
6S13|1|A|G|445
6S13|1|A|G|446
6S13|1|A|A|447
6S13|1|A|A|448
6S13|1|A|U|449
6S13|1|A|C|450
6S13|1|A|U|451
6S13|1|A|G|452
*
6S13|1|A|U|467
6S13|1|A|A|468
6S13|1|A|A|469
6S13|1|A|G|470
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L28
Coloring options: