J4_6S13_006
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6S13_006 not in the Motif Atlas
- Homologous match to J4_7A0S_008
- Geometric discrepancy: 0.1284
- The information below is about J4_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6S13|1|A|G|1799
6S13|1|A|A|1800
6S13|1|A|C|1801
6S13|1|A|U|1802
6S13|1|A|G|1803
*
6S13|1|A|C|1815
6S13|1|A|A|1816
6S13|1|A|C|1817
6S13|1|A|A|1818
6S13|1|A|G|1819
*
6S13|1|A|U|1854
6S13|1|A|G|1855
6S13|1|A|A|1856
6S13|1|A|C|1857
*
6S13|1|A|G|2002
6S13|1|A|U|2003
6S13|1|A|A|2004
6S13|1|A|A|2005
6S13|1|A|C|2006
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: