J4_6S13_017

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

6S13|1|a|C|247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S13_017 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.5292

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6S13|1|a|G|114
6S13|1|a|A|115
6S13|1|a|G|116
6S13|1|a|U|117
6S13|1|a|A|118
6S13|1|a|A|119
6S13|1|a|C|120
6S13|1|a|A|121
6S13|1|a|C|122
*
6S13|1|a|G|246
6S13|1|a|C|247
6S13|1|a|U|248
*
6S13|1|a|A|294
6S13|1|a|U|295
6S13|1|a|A|296
6S13|1|a|G|297
*
6S13|1|a|C|319
6S13|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17