J4_6S47_009

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S47_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1128

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6S47|1|AA|U|3010
6S47|1|AA|A|3011
6S47|1|AA|A|3012
*
6S47|1|AA|U|3042
6S47|1|AA|C|3043
*
6S47|1|AA|G|3098
6S47|1|AA|C|3099
6S47|1|AA|U|3100
*
6S47|1|AA|A|3134
6S47|1|AA|U|3135
6S47|1|AA|G|3136

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AQ

60S ribosomal protein L16-A

Chain AX

60S ribosomal protein L23-A