J4_6S47_010
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6S47|1|BA|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6S47_010 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0729
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|BA|C|99
6S47|1|BA|A|100
6S47|1|BA|U|101
6S47|1|BA|U|102
6S47|1|BA|A|103
6S47|1|BA|A|104
6S47|1|BA|A|105
6S47|1|BA|U|106
6S47|1|BA|C|107
*
6S47|1|BA|G|307
6S47|1|BA|C|308
6S47|1|BA|C|309
*
6S47|1|BA|G|357
6S47|1|BA|U|358
6S47|1|BA|A|359
6S47|1|BA|A|360
6S47|1|BA|C|361
*
6S47|1|BA|G|383
6S47|1|BA|G|384
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BF
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S8-A
- Chain BM
- 40S ribosomal protein S11-A
- Chain BY
- 40S ribosomal protein S23-A
Coloring options: