3D structure

PDB id
6SGC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled on a poly(A) tail
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAAAUAU*AGG*CAUGUU*AG
Length
18 nucleotides
Bulged bases
6SGC|1|54|A|2366, 6SGC|1|54|U|2369, 6SGC|1|54|U|2828
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SGC|1|54|C|2365
6SGC|1|54|A|2366
6SGC|1|54|A|2367
6SGC|1|54|A|2368
6SGC|1|54|U|2369
6SGC|1|54|A|2370
6SGC|1|54|U|2371
*
6SGC|1|54|A|2389
6SGC|1|54|G|2390
6SGC|1|54|G|2391
*
6SGC|1|54|C|2824
6SGC|1|54|A|2825
6SGC|1|54|U|2826
6SGC|1|54|G|2827
6SGC|1|54|U|2828
6SGC|1|54|U|2829
*
6SGC|1|54|A|3856
6SGC|1|54|G|3857

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain P2
uL22
Chain R2
eL19
Chain d2
eL31

Coloring options:

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