J4_6SGC_007
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6SGC|1|54|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SGC_007 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0794
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|G|2406
6SGC|1|54|G|2407
6SGC|1|54|U|2408
6SGC|1|54|U|2409
6SGC|1|54|C|2410
*
6SGC|1|54|G|2434
6SGC|1|54|G|2435
6SGC|1|54|U|2436
6SGC|1|54|C|2437
6SGC|1|54|A|2438
6SGC|1|54|G|2439
*
6SGC|1|54|U|2538
6SGC|1|54|C|2539
*
6SGC|1|54|G|2777
6SGC|1|54|G|2778
6SGC|1|54|C|2779
6SGC|1|54|C|2780
6SGC|1|54|G|2781
6SGC|1|54|U|2782
6SGC|1|54|A|2783
6SGC|1|54|C|2784
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R2
- eL19
- Chain X2
- Ribosomal_L23eN domain-containing protein
- Chain g2
- eL34
- Chain h2
- uL29
- Chain j2
- Ribosomal protein L37
- Chain k2
- eL38
- Chain l2
- eL39
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