J4_6SGC_015
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6SGC|1|A1|A|672, 6SGC|1|A1|A|1083, 6SGC|1|A1|C|1085, 6SGC|1|A1|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SGC_015 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0707
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|A1|A|671
6SGC|1|A1|A|672
6SGC|1|A1|G|673
*
6SGC|1|A1|C|1032
6SGC|1|A1|G|1033
6SGC|1|A1|A|1034
6SGC|1|A1|A|1035
6SGC|1|A1|A|1036
6SGC|1|A1|G|1037
*
6SGC|1|A1|C|1078
6SGC|1|A1|C|1079
6SGC|1|A1|A|1080
6SGC|1|A1|U|1081
6SGC|1|A1|A|1082
6SGC|1|A1|A|1083
6SGC|1|A1|A|1084
6SGC|1|A1|C|1085
6SGC|1|A1|G|1086
6SGC|1|A1|A|1087
6SGC|1|A1|U|1088
6SGC|1|A1|G|1089
*
6SGC|1|A1|U|1160
6SGC|1|A1|U|1161
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain M1
- Ribosomal protein S11
- Chain O1
- Ribosomal_S13_N domain-containing protein
- Chain P1
- uS11
- Chain X1
- Ribosomal protein S15a
- Chain Y1
- uS12
- Chain b1
- eS26
- Chain n2
- 60s ribosomal protein l41
- Chain p2
- eL43
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