J4_6SJ6_008
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GAGC*GAC*GGACG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SJ6_008 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.231
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SJ6|1|A|G|2670
6SJ6|1|A|A|2671
6SJ6|1|A|G|2672
6SJ6|1|A|C|2673
*
6SJ6|1|A|G|2701
6SJ6|1|A|A|2702
6SJ6|1|A|C|2703
*
6SJ6|1|A|G|2758
6SJ6|1|A|G|2759
6SJ6|1|A|A|2760
6SJ6|1|A|C|2761
6SJ6|1|A|G|2762
*
6SJ6|1|A|C|2796
6SJ6|1|A|C|2797
6SJ6|1|A|C|2798
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain N
- 50S ribosomal protein L14
Coloring options: