J4_6SKF_007
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GGUUC*GGUUAG*C(4AC)*GACCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6SKF|1|BA|U|1477
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SKF_007 not in the Motif Atlas
- Homologous match to J4_4V9F_004
- Geometric discrepancy: 0.1152
- The information below is about J4_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.2
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6SKF|1|BA|G|1446
6SKF|1|BA|G|1447
6SKF|1|BA|U|1448
6SKF|1|BA|U|1449
6SKF|1|BA|C|1450
*
6SKF|1|BA|G|1474
6SKF|1|BA|G|1475
6SKF|1|BA|U|1476
6SKF|1|BA|U|1477
6SKF|1|BA|A|1478
6SKF|1|BA|G|1479
*
6SKF|1|BA|C|1542
6SKF|1|BA|4AC|1543
*
6SKF|1|BA|G|1742
6SKF|1|BA|A|1743
6SKF|1|BA|C|1744
6SKF|1|BA|C|1745
6SKF|1|BA|G|1746
6SKF|1|BA|U|1747
6SKF|1|BA|A|1748
6SKF|1|BA|C|1749
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BS
- 50S ribosomal protein L19e
- Chain BW
- 50S ribosomal protein L23
- Chain BZ
- 50S ribosomal protein L29
- Chain Be
- 50S ribosomal protein L34e
- Chain Bh
- 50S ribosomal protein L37e
- Chain Bi
- 50S ribosomal protein L39e
Coloring options: