J4_6SKG_006

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAGCAUAG*CC*GUGUC*GG

Length

17 nucleotides

Bulged bases

6SKG|1|BA|U|1410, 6SKG|1|BA|A|1411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SKG_006 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.1671

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6SKG|1|BA|C|1405
6SKG|1|BA|A|1406
6SKG|1|BA|G|1407
6SKG|1|BA|C|1408
6SKG|1|BA|A|1409
6SKG|1|BA|U|1410
6SKG|1|BA|A|1411
6SKG|1|BA|G|1412
*
6SKG|1|BA|C|1430
6SKG|1|BA|C|1431
*
6SKG|1|BA|G|1791
6SKG|1|BA|U|1792
6SKG|1|BA|G|1793
6SKG|1|BA|U|1794
6SKG|1|BA|C|1795
*
6SKG|1|BA|G|2122
6SKG|1|BA|G|2123

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain BV

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L31e