J4_6SPD_006

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPD_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0966

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|G|1759
6SPD|1|A|A|1760
6SPD|1|A|C|1761
6SPD|1|A|U|1762
6SPD|1|A|G|1763
*
6SPD|1|A|C|1775
6SPD|1|A|A|1776
6SPD|1|A|C|1777
6SPD|1|A|A|1778
6SPD|1|A|G|1779
*
6SPD|1|A|U|1814
6SPD|1|A|G|1815
6SPD|1|A|A|1816
6SPD|1|A|C|1817
*
6SPD|1|A|G|1962
6SPD|1|A|U|1963
6SPD|1|A|A|1964
6SPD|1|A|A|1965
6SPD|1|A|C|1966

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2