J4_6SPD_008
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6SPD|1|A|A|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SPD_008 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1361
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SPD|1|A|C|2272
6SPD|1|A|G|2273
6SPD|1|A|A|2274
6SPD|1|A|A|2275
6SPD|1|A|G|2276
*
6SPD|1|A|U|2330
6SPD|1|A|U|2331
6SPD|1|A|G|2332
6SPD|1|A|A|2333
6SPD|1|A|C|2334
*
6SPD|1|A|G|2357
6SPD|1|A|G|2358
6SPD|1|A|U|2359
*
6SPD|1|A|A|2368
6SPD|1|A|G|2369
6SPD|1|A|G|2370
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L33
- Chain 5
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
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