J4_6SPF_002

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGAAC*GGCC*GUG*CGUAC

Length

17 nucleotides

Bulged bases

6SPF|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPF_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.5879

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6SPF|1|A|G|291
6SPF|1|A|G|292
6SPF|1|A|A|293
6SPF|1|A|A|294
6SPF|1|A|C|295
*
6SPF|1|A|G|310
6SPF|1|A|G|311
6SPF|1|A|C|312
6SPF|1|A|C|313
*
6SPF|1|A|G|317
6SPF|1|A|U|318
6SPF|1|A|G|319
*
6SPF|1|A|C|331
6SPF|1|A|G|332
6SPF|1|A|U|333
6SPF|1|A|A|334
6SPF|1|A|C|335

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24