J4_6SPF_010

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGGC*GAC*GGAAA*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPF_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1111

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6SPF|1|A|G|2630
6SPF|1|A|G|2631
6SPF|1|A|G|2632
6SPF|1|A|C|2633
*
6SPF|1|A|G|2661
6SPF|1|A|A|2662
6SPF|1|A|C|2663
*
6SPF|1|A|G|2718
6SPF|1|A|G|2719
6SPF|1|A|A|2720
6SPF|1|A|A|2721
6SPF|1|A|A|2722
*
6SPF|1|A|U|2756
6SPF|1|A|G|2757
6SPF|1|A|C|2758

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14