J4_6SPG_002

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGAAC*GGCC*GUG*CGUAC

Length

17 nucleotides

Bulged bases

6SPG|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPG_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.5856

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6SPG|1|A|G|291
6SPG|1|A|G|292
6SPG|1|A|A|293
6SPG|1|A|A|294
6SPG|1|A|C|295
*
6SPG|1|A|G|310
6SPG|1|A|G|311
6SPG|1|A|C|312
6SPG|1|A|C|313
*
6SPG|1|A|G|317
6SPG|1|A|U|318
6SPG|1|A|G|319
*
6SPG|1|A|C|331
6SPG|1|A|G|332
6SPG|1|A|U|333
6SPG|1|A|A|334
6SPG|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24