J4_6SV4_018
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 6SV4|1|YQ|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SV4_018 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1224
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SV4|1|YQ|U|112
6SV4|1|YQ|C|113
*
6SV4|1|YQ|G|267
6SV4|1|YQ|A|268
6SV4|1|YQ|G|269
6SV4|1|YQ|U|270
6SV4|1|YQ|C|271
6SV4|1|YQ|G|272
*
6SV4|1|YQ|C|293
6SV4|1|YQ|U|294
6SV4|1|YQ|A|295
6SV4|1|YQ|A|296
6SV4|1|YQ|G|297
6SV4|1|YQ|U|298
6SV4|1|YQ|G|299
*
6SV4|1|YQ|U|316
6SV4|1|YQ|A|317
6SV4|1|YQ|A|318
6SV4|1|YQ|A|319
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XC
- 60S ribosomal protein L36-A
- Chain XJ
- 60S ribosomal protein L13-A
- Chain XQ
- 60S ribosomal protein L15-A
- Chain YP
- 60S ribosomal protein L35-A
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