J4_6SV4_028

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SV4_028 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1492

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6SV4|1|YQ|U|3010
6SV4|1|YQ|A|3011
6SV4|1|YQ|A|3012
*
6SV4|1|YQ|U|3042
6SV4|1|YQ|C|3043
*
6SV4|1|YQ|G|3098
6SV4|1|YQ|C|3099
6SV4|1|YQ|U|3100
*
6SV4|1|YQ|A|3134
6SV4|1|YQ|U|3135
6SV4|1|YQ|G|3136

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XB

60S ribosomal protein L23-A

Chain XU

60S ribosomal protein L16-A

Chain YA

60S ribosomal protein L3