3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
6T59|1|54|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6T59_002 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1022
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6T59|1|54|C|111
6T59|1|54|C|112
*
6T59|1|54|G|278
6T59|1|54|A|279
6T59|1|54|G|280
6T59|1|54|U|281
6T59|1|54|C|282
6T59|1|54|G|283
*
6T59|1|54|C|304
6T59|1|54|A|305
6T59|1|54|A|306
6T59|1|54|A|307
6T59|1|54|G|308
6T59|1|54|C|309
6T59|1|54|G|310
*
6T59|1|54|U|327
6T59|1|54|A|328
6T59|1|54|A|329
6T59|1|54|G|330

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain L3
eL13
Chain N3
Ribosomal protein L15
Chain h3
uL29
Chain i3
60S ribosomal protein L36

Coloring options:


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