J4_6T59_004

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6T59|1|54|A|2366, 6T59|1|54|U|2369, 6T59|1|54|U|2828

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T59|1|54|C|2365
6T59|1|54|A|2366
6T59|1|54|A|2367
6T59|1|54|A|2368
6T59|1|54|U|2369
6T59|1|54|A|2370
6T59|1|54|U|2371
*
6T59|1|54|A|2389
6T59|1|54|G|2390
6T59|1|54|G|2391
*
6T59|1|54|C|2824
6T59|1|54|A|2825
6T59|1|54|U|2826
6T59|1|54|G|2827
6T59|1|54|U|2828
6T59|1|54|U|2829
*
6T59|1|54|A|3856
6T59|1|54|G|3857

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain NI

Nascent polypeptide-associated complex subunit alpha N-terminal region

Chain P3

uL22

Chain R3

eL19

Chain d3

eL31