J4_6T59_007

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T59_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.1104

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

6T59|1|54|G|3634
6T59|1|54|A|3635
6T59|1|54|C|3636
6T59|1|54|U|3637
6T59|1|54|G|3638
*
6T59|1|54|C|3650
6T59|1|54|A|3651
6T59|1|54|A|3652
6T59|1|54|A|3653
6T59|1|54|G|3654
*
6T59|1|54|U|3690
6T59|1|54|G|3691
6T59|1|54|A|3692
6T59|1|54|U|3693
6T59|1|54|U|3694
*
6T59|1|54|A|3821
6T59|1|54|U|3822
6T59|1|54|G|3823
6T59|1|54|A|3824
6T59|1|54|A|3825
6T59|1|54|C|3826

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain n3

60s ribosomal protein l41

Chain p3

eL43