J4_6TB3_011

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TB3_011 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0836

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6TB3|1|BQ|U|3010
6TB3|1|BQ|A|3011
6TB3|1|BQ|A|3012
*
6TB3|1|BQ|U|3042
6TB3|1|BQ|C|3043
*
6TB3|1|BQ|G|3098
6TB3|1|BQ|C|3099
6TB3|1|BQ|U|3100
*
6TB3|1|BQ|A|3134
6TB3|1|BQ|U|3135
6TB3|1|BQ|G|3136

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3