J4_6TC3_001

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6TC3|1|16S1|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2576

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6TC3|1|16S1|G|115
6TC3|1|16S1|A|116
6TC3|1|16S1|G|117
6TC3|1|16S1|U|118
6TC3|1|16S1|A|119
6TC3|1|16S1|A|120
6TC3|1|16S1|U|121
6TC3|1|16S1|G|122
*
6TC3|1|16S1|U|239
6TC3|1|16S1|G|240
*
6TC3|1|16S1|C|286
6TC3|1|16S1|U|287
6TC3|1|16S1|A|288
6TC3|1|16S1|G|289
*
6TC3|1|16S1|C|311
6TC3|1|16S1|C|312

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S161

30S ribosomal protein S16

Chain S171

30S ribosomal protein S17