J4_6TC3_002

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6TC3|1|16S1|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0984

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6TC3|1|16S1|G|142
6TC3|1|16S1|A|143
6TC3|1|16S1|G|144
*
6TC3|1|16S1|C|178
6TC3|1|16S1|A|179
6TC3|1|16S1|U|180
6TC3|1|16S1|A|181
6TC3|1|16S1|A|182
6TC3|1|16S1|C|183
6TC3|1|16S1|G|184
*
6TC3|1|16S1|C|193
6TC3|1|16S1|C|194
6TC3|1|16S1|A|195
6TC3|1|16S1|A|196
6TC3|1|16S1|A|197
6TC3|1|16S1|G|198
*
6TC3|1|16S1|U|219
6TC3|1|16S1|G|220
6TC3|1|16S1|C|221

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S201

30S ribosomal protein S20