J4_6TC3_004

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6TC3|1|23S1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0894

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6TC3|1|23S1|C|268
6TC3|1|23S1|C|269
*
6TC3|1|23S1|G|370
6TC3|1|23S1|A|371
6TC3|1|23S1|G|372
6TC3|1|23S1|U|373
6TC3|1|23S1|A|374
6TC3|1|23S1|G|375
*
6TC3|1|23S1|U|399
6TC3|1|23S1|G|400
6TC3|1|23S1|A|401
6TC3|1|23S1|A|402
6TC3|1|23S1|U|403
6TC3|1|23S1|A|404
6TC3|1|23S1|U|405
6TC3|1|23S1|G|406
*
6TC3|1|23S1|C|421
6TC3|1|23S1|A|422
6TC3|1|23S1|A|423
6TC3|1|23S1|G|424

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L091

50S ribosomal protein L9

Chain L281

50S ribosomal protein L28