J4_6TC3_014

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0533

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6TC3|1|23S1|G|2643
6TC3|1|23S1|G|2644
6TC3|1|23S1|G|2645
6TC3|1|23S1|C|2646
*
6TC3|1|23S1|G|2674
6TC3|1|23S1|A|2675
6TC3|1|23S1|C|2676
*
6TC3|1|23S1|G|2731
6TC3|1|23S1|G|2732
6TC3|1|23S1|A|2733
6TC3|1|23S1|A|2734
6TC3|1|23S1|G|2735
*
6TC3|1|23S1|U|2769
6TC3|1|23S1|G|2770
6TC3|1|23S1|C|2771

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L131

50S ribosomal protein L13

Chain L141

50S ribosomal protein L14