J4_6TH6_006

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAGCAUAG*CC*GUGUC*GG

Length

17 nucleotides

Bulged bases

6TH6|1|BA|U|1410, 6TH6|1|BA|A|1411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TH6_006 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.1736

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6TH6|1|BA|C|1405
6TH6|1|BA|A|1406
6TH6|1|BA|G|1407
6TH6|1|BA|C|1408
6TH6|1|BA|A|1409
6TH6|1|BA|U|1410
6TH6|1|BA|A|1411
6TH6|1|BA|G|1412
*
6TH6|1|BA|C|1430
6TH6|1|BA|C|1431
*
6TH6|1|BA|G|1791
6TH6|1|BA|U|1792
6TH6|1|BA|G|1793
6TH6|1|BA|U|1794
6TH6|1|BA|C|1795
*
6TH6|1|BA|G|2122
6TH6|1|BA|G|2123

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain BV

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L31e