J4_6TNN_008

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TNN_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0995

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6TNN|1|U|G|1799
6TNN|1|U|A|1800
6TNN|1|U|C|1801
6TNN|1|U|U|1802
6TNN|1|U|G|1803
*
6TNN|1|U|C|1815
6TNN|1|U|A|1816
6TNN|1|U|C|1817
6TNN|1|U|A|1818
6TNN|1|U|G|1819
*
6TNN|1|U|U|1854
6TNN|1|U|G|1855
6TNN|1|U|A|1856
6TNN|1|U|C|1857
*
6TNN|1|U|G|2002
6TNN|1|U|C|2003
6TNN|1|U|A|2004
6TNN|1|U|A|2005
6TNN|1|U|C|2006

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2