J4_6TPQ_005
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GUUUC*GGUUAG*CC*GCCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6TPQ|1|U|U|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6TPQ_005 not in the Motif Atlas
- Homologous match to J4_4WF9_005
- Geometric discrepancy: 0.1055
- The information below is about J4_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6TPQ|1|U|G|1347
6TPQ|1|U|U|1348
6TPQ|1|U|U|1349
6TPQ|1|U|U|1350
6TPQ|1|U|C|1351
*
6TPQ|1|U|G|1375
6TPQ|1|U|G|1376
6TPQ|1|U|U|1377
6TPQ|1|U|U|1378
6TPQ|1|U|A|1379
6TPQ|1|U|G|1380
*
6TPQ|1|U|C|1441
6TPQ|1|U|C|1442
*
6TPQ|1|U|G|1640
6TPQ|1|U|C|1641
6TPQ|1|U|C|1642
6TPQ|1|U|C|1643
6TPQ|1|U|G|1644
6TPQ|1|U|U|1645
6TPQ|1|U|A|1646
6TPQ|1|U|C|1647
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
Coloring options: