J4_6U48_001

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6U48|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6U48_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0898

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|C|268
6U48|1|CA|C|269
*
6U48|1|CA|G|370
6U48|1|CA|A|371
6U48|1|CA|G|372
6U48|1|CA|U|373
6U48|1|CA|A|374
6U48|1|CA|G|375
*
6U48|1|CA|U|399
6U48|1|CA|G|400
6U48|1|CA|A|401
6U48|1|CA|A|402
6U48|1|CA|U|403
6U48|1|CA|A|404
6U48|1|CA|U|405
6U48|1|CA|G|406
*
6U48|1|CA|C|421
6U48|1|CA|A|422
6U48|1|CA|A|423
6U48|1|CA|G|424

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CH

50S ribosomal protein bL9

Chain CY

50S ribosomal protein bL28