J4_6U48_004

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6U48|1|CA|G|1271, 6U48|1|CA|A|1272, 6U48|1|CA|U|1273, 6U48|1|CA|A|1275, 6U48|1|CA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6U48_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0841

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6U48|1|CA|C|1270
6U48|1|CA|G|1271
6U48|1|CA|A|1272
6U48|1|CA|U|1273
6U48|1|CA|A|1274
6U48|1|CA|A|1275
6U48|1|CA|A|1276
*
6U48|1|CA|U|1294
6U48|1|CA|C|1295
*
6U48|1|CA|G|1645
6U48|1|CA|C|1646
6U48|1|CA|U|1647
6U48|1|CA|U|1648
*
6U48|1|CA|A|2009
6U48|1|CA|G|2010

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein bL32

Chain CO

50S ribosomal protein bL17

Chain CT

50S ribosomal protein uL22