J4_6U48_009

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6U48|1|CA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6U48_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.11

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6U48|1|CA|C|1833
6U48|1|CA|U|1834
6U48|1|CA|2MG|1835
*
6U48|1|CA|C|1905
6U48|1|CA|G|1906
*
6U48|1|CA|C|1924
6U48|1|CA|C|1925
6U48|1|CA|U|1926
6U48|1|CA|A|1927
6U48|1|CA|A|1928
6U48|1|CA|G|1929
6U48|1|CA|G|1930
6U48|1|CA|U|1931
6U48|1|CA|A|1932
6U48|1|CA|G|1933
*
6U48|1|CA|C|1967
6U48|1|CA|G|1968
6U48|1|CA|A|1969
6U48|1|CA|A|1970
6U48|1|CA|U|1971
6U48|1|CA|G|1972

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2