J4_6U48_011
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6U48_011 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0904
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6U48|1|CA|G|2643
6U48|1|CA|G|2644
6U48|1|CA|G|2645
6U48|1|CA|C|2646
*
6U48|1|CA|G|2674
6U48|1|CA|A|2675
6U48|1|CA|C|2676
*
6U48|1|CA|G|2731
6U48|1|CA|G|2732
6U48|1|CA|A|2733
6U48|1|CA|A|2734
6U48|1|CA|G|2735
*
6U48|1|CA|U|2769
6U48|1|CA|G|2770
6U48|1|CA|C|2771
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CD
- 50S ribosomal protein uL3
- Chain CK
- 50S ribosomal protein uL13
- Chain CL
- 50S ribosomal protein uL14
Coloring options: