J4_6UCQ_006

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UCQ_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0801

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6UCQ|1|1A|G|1772
6UCQ|1|1A|A|1773
6UCQ|1|1A|C|1774
6UCQ|1|1A|U|1775
6UCQ|1|1A|G|1776
*
6UCQ|1|1A|C|1788
6UCQ|1|1A|A|1789
6UCQ|1|1A|C|1790
6UCQ|1|1A|A|1791
6UCQ|1|1A|G|1792
*
6UCQ|1|1A|C|1827
6UCQ|1|1A|G|1828
6UCQ|1|1A|A|1829
6UCQ|1|1A|C|1830
*
6UCQ|1|1A|G|1975
6UCQ|1|1A|U|1976
6UCQ|1|1A|A|1977
6UCQ|1|1A|A|1978
6UCQ|1|1A|C|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA